Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100077426 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4337
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008995	Metagenome / Metatranscriptome	324	Y
F012339	Metagenome / Metatranscriptome	281	Y
F017466	Metagenome / Metatranscriptome	240	Y
F021290	Metagenome / Metatranscriptome	219	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

324

Metagenome / Metatranscriptome

281

Metagenome / Metatranscriptome

240

Metagenome / Metatranscriptome

219

Protein ID	Family	RBS	Sequence
B570J40625_1000774262	F012339	GGAG	MSYQPYNPPLTTPPVQNPHSPATNGYKQQPVDIPGVLHQSRQLYQPVASETPKENK*
B570J40625_1000774263	F008995	AGGAG	MAAVQVVNATGNVAWTTDKVEIATTAATVTFQVSLTQTQYIQANGVPVNTSMPTGNLYANAIVVPGNTVQQYYVGAGNFLNITAGTGFSATALGTASSATAGVYGSTSS*
B570J40625_1000774264	F021290	GAG	MRAREFISEASRPGRRAEANHEFDVAHPGLVGPPASGDTYWGRYYDFYRVASLAGMDIEQLESADDISFFGNLPVFSAYTEYDRRKLIAIMKKLGMKPQDHVEPGSHEPDYVNKSSPLPAFKGYKK*
B570J40625_1000774266	F017466	GAGG	MRAREFVMEVKYGAAEDVPANAKKLPKSHASAIKGAISMPDISQTKQGGSPYTQWRFGIAMAGAPDYPTPAAGAFAGDPLLATYSDADLKIINSAAKSVGAGEVKKLTDNRSTEAEHVHKASPVKAFGGYK*

Protein ID

Family

RBS

Sequence

B570J40625_1000774262

GGAG

MSYQPYNPPLTTPPVQNPHSPATNGYKQQPVDIPGVLHQSRQLYQPVASETPKENK*

B570J40625_1000774263

AGGAG

MAAVQVVNATGNVAWTTDKVEIATTAATVTFQVSLTQTQYIQANGVPVNTSMPTGNLYANAIVVPGNTVQQYYVGAGNFLNITAGTGFSATALGTASSATAGVYGSTSS*

B570J40625_1000774264

GAG

MRAREFISEASRPGRRAEANHEFDVAHPGLVGPPASGDTYWGRYYDFYRVASLAGMDIEQLESADDISFFGNLPVFSAYTEYDRRKLIAIMKKLGMKPQDHVEPGSHEPDYVNKSSPLPAFKGYKK*

B570J40625_1000774266

GAGG

MRAREFVMEVKYGAAEDVPANAKKLPKSHASAIKGAISMPDISQTKQGGSPYTQWRFGIAMAGAPDYPTPAAGAFAGDPLLATYSDADLKIINSAAKSVGAGEVKKLTDNRSTEAEHVHKASPVKAFGGYK*

NMPFamsDB