Scaffold B570J40625_100069239

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100069239
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4706
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022879	Metagenome / Metatranscriptome	212	Y
F047660	Metagenome / Metatranscriptome	149	Y
F085647	Metagenome / Metatranscriptome	111	Y
F097255	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10006923914	F085647	N/A	MLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
B570J40625_10006923915	F047660	N/A	MSYIQIPDFVFDSIINSLERGYEVCDAVDYSSEEIEKSSEYATGYSRATIAGVLEDLKRYKQTVN*
B570J40625_1000692392	F097255	GAG	MIPQRIRQLIMNAEREKIARDFWAEIERLAAEKEVTVDYYLAEFY*
B570J40625_1000692394	F022879	AGGAG	MTHHVAHMDKMLFDLKQQYQAQIARLQDKISDQEQEIAKLKTLITLLSIEREYDC*