Scaffold B570J40625_100064530

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100064530
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4952
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10006453010	F013524	N/A	MKTNKEVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF*
B570J40625_10006453011	F009135	N/A	MSKPKYYLAINLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITIEKVMYRTNED*
B570J40625_1000645304	F099167	N/A	MNVKTINRTIDIAKAMCPLNLEHRCSHMAFLIRCGKIVHIGTNSCKSHPETLKYDYKDHQKVGIHAELAVCMKSDKDNLKDYKMIVLRVDRTGKLANSKPCCGCQSVIQQFDVGEVWYSDNKGNVVML*
B570J40625_1000645307	F010081	N/A	MKEQIDAIIKKHCLKMQEVDKTKSIPMIVKQLDSVVYDMYRELYGLRDIRADNYYLNSFTADDKKGHCC*
B570J40625_1000645308	F007859	N/A	MKNLLIVLLLCTGCTGGMYLRYSYNRALENLPLCSRVHAINNDYITYSMIENSTNSVYVLYTNYYRAYYNCDGKIINTIKN*
B570J40625_1000645309	F008688	N/A	MLGSLAAVMLTAMSVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE*