Scaffold B570J40625_100059939

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100059939
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5232
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024101	Metagenome	207	Y
F053253	Metagenome	141	Y
F063633	Metagenome	129	Y
F084156	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10005993913	F084156	AGGAG	MQDYDLCWYDTKQGDNCQWECSDIPGSFYCKNCNGLRVWNRFAQAYSYYVREGHYGF*
B570J40625_10005993914	F053253	GAGG	MDFDLDTPIEKILTDMLDKVEGHVGDCDCVNCNSLEVLAYM
B570J40625_1000599395	F024101	AGG	MPKEKPIHKMVEEVFDKDITSDLIDELAEEKTFIVNTLKKFVEHDEIWIQLVDNIEARKNFLTNLQMLFLNDIENSTLIELATTKWGND*
B570J40625_1000599397	F063633	N/A	MSNTYKDRKVAHVQGLRRSGASGIHKNKVKDRQKRLSHSKIWKDYIKDENE*