Scaffold B570J40625_100057348

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100057348
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5403
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F047014	Metagenome / Metatranscriptome	150	Y
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F055422	Metagenome / Metatranscriptome	138	N
F057099	Metagenome / Metatranscriptome	136	N
F062460	Metagenome / Metatranscriptome	130	N
F065414	Metagenome / Metatranscriptome	127	N
F069678	Metagenome / Metatranscriptome	123	N
F073069	Metagenome / Metatranscriptome	120	N
F093242	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000573481	F057099	N/A	MKILRKDWELISKIAWNILNLKLEDSKKTLNLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYK*
B570J40625_10005734810	F041008	N/A	MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVTNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLKMMYEYLIENFNSHVVTKG*
B570J40625_10005734811	F046173	GAG	MLSLKDREIYEIVIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSVGVQLYIKEIDTFYKEKLIGRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVMEIDSKLINLTKLLNYITEKQKEQE*
B570J40625_10005734812	F073069	N/A	MTSKDTVIAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEIKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLNKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARMRKWTRFY*
B570J40625_10005734813	F047014	AGG	MSIQLNEARDQWIRYLINSTIAWVEAKRDKEAKHRCAKIINIIQKLKKLDQQWYLGNSVPERNLIPIQHNGQSSYHTLQGA*
B570J40625_1000573482	F065414	N/A	MSEPAKMSEPEVVINLNNLEELNIQRAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKYNKERFKIIFKVLKRIKAMEPENHLNLASYIVSRNGV*
B570J40625_1000573483	F093242	N/A	MEYSNSEKDKIMNIIQDSMNRIDTNTNYNYNYENFLRIYAAMRKLKTKEPGLKFKVSKIPTNEDNHFFKKRNEN*
B570J40625_1000573484	F069678	N/A	MSNQEQLAEGTSSTETLVNTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPRWSINGTKRNLDKPIKSRNIGLPTNSSESESENERPDDRTMTGTAHAYR*
B570J40625_1000573485	F062460	N/A	MNLEKSIIEAVTTAVKEIRQESCIKKQVKSLMKIYDAIVVKDHETSTESSLKTTRKRKRSISHE*
B570J40625_1000573486	F055422	AGG	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHIRNASPPNRDRNPPDRNRDSLDIEHYSETEPLITEV*
B570J40625_1000573488	F055421	N/A	MEEFTNPYKEINIEIHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY*
B570J40625_1000573489	F054566	AGG	MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGIIITKEKPIKVKQTNKDAN*