Scaffold B570J40625_100052781

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100052781
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5743
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022860	Metagenome / Metatranscriptome	212	Y
F031492	Metagenome	182	Y
F082345	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10005278112	F022860	GAG	MKRLANLIKDNAWTYAGTGLVLITLSGPTLRQAIWVVGVSLVLHAALTLSTKESE*
B570J40625_1000527813	F082345	GAGG	MTTKTIVEITWADTHSGGIGWTPISDIDQAEYIITSCGYLLSIGDGGKENHVTLYQSRTEDDDLDHILHIPVAMIRNIKAIDIPYIAKT*
B570J40625_1000527814	F031492	GAG	MRLFNVGDRVIIDDESGTIESVIVDGQQTKYDVRYGQTFMLAVDVPEDEIEPWMPDEQ*