NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100032948

Scaffold B570J40625_100032948


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100032948 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8045
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F029568Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000329486F004256AGGMKYKYYWNDIPGVGLSRNNLIYTSLISEDKKTFVQWYFNDINYHKDQNEVVDPELMQAKWDREIFYLSQMSQHYPDLVPKIKNIDILEKKIYLEIDGLDFWNRAGCLTENYDSVLPDWQEQMLNIIRAYKDLGWYKFSMHPSSYFVVDGKLKSINYFFVYSQDAGPISIADHSSHIHSHRQEIMRKQVEAMGLDWNAPQPLSKLQELCFESFRTNYPADFIEKAKEIYRD*
B570J40625_1000329489F029568N/AMNRYDLSNTEIKIYYESCPEFESVRDLCLQEDNWLRKNYTKENLLIEQHTGYGVVYQKSTGKPMVMGGIFNDGRYPKNVAKQINRLYTFPEFRMKHTDMTDGFRVTCSLIDALEKVNKYDIYLITMQNRPRGGKRWWDTWVNHMDTASNGKWTLGTGYIQTCNAQVQKCWQNYVYCETTPGAFAEWAPAIINEEGWAAMPEGA*
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