Scaffold B570J40625_100026661

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100026661
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9352
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F048994	Metagenome	147	N
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000266611	F004583	AGGAG	MKSTRNSDRLRDILLSTRHQIVALKDIQIDLLRHDSKVAHQVSQQISALEEVYKHQLSLVQMAENLEPKRNGWFTGHIKTKEDRLANILD*
B570J40625_1000266612	F048994	N/A	MIGIVKIEFGMMNLYVNGVCVVSTTVIAGIKHGVRKYNLQGYTMVAAE*
B570J40625_1000266614	F006220	GAGG	MKKRKYVEELNLASGTEMMRASQMRPSIFKDKSKYTRKTKHKKVEHND*
B570J40625_1000266615	F007310	N/A	MRTVFWNDTERWFNHHHYETLIKDITGFDLRQSLCSETVKYMAKRLSDTKYQRRFKTLYTIYENEYNTLVEKFNNQADNNGKIEVSYEKEKVCGRA*
B570J40625_1000266616	F013084	N/A	MGIMNVLGMMQEARDVALSRGHNVKNWDVLGGDCYSLECKDCKMQVMVKEYPLPNEIQLGGEAIAVNCVKPEKKKLSKKT*
B570J40625_1000266617	F070110	N/A	MFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIYQYCADNGIEVQDEF*
B570J40625_1000266618	F010398	AGGAG	MEISIEGSVEVNYHLMIDEDVFNECCEEVGLDPANFKKFTKAQWDELNPHLIQAVVDNVADIDYTEIHEESTVYADTLTIDDGDKMTTVYYEENRKTGSVEIL*