Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100024415 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100024415 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9938
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9938

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015718	Metagenome / Metatranscriptome	252	Y
F018350	Metagenome / Metatranscriptome	235	Y
F074416	Metagenome / Metatranscriptome	119	Y
F078244	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002441511	F018350	GGAGG	LDILSNMTFKDIINKYPIVNTDWECNHNHIIGSMSHRIMAVTGIDSYNGMKQFHQYLGITGYFSRIRKDDGSGVIFNSDPWMREFKMYYTRGGIKNGIYECKRIYGVNGGNDVYIMVTSVEGSRVWCMDVFER*
B570J40625_10002441512	F074416	AGG	MGKTIINVSNDFFDMNDEKGDVMYSFTGLCGLTKDNVLYGKTVNLSKMYDNMLSDVREFLFGGEFVSMIDMVEYDINISKFVNAYISKKYGISIRCVYNKINGNTSRNATMSVDILYNELKVKYGITAIDWMYLYNNMNFHTNDVDILEYVANKILGNDFYNYFVTEYNIRTVGVVKKVHNSIKVEWNNGGSKEIHLSRFVKSYNRWWTMTTGKKDKNRGDIKDYDKLLNGRSVTEVFPVYCPVFSNLRMNYTGIDFDNGKNNIKKCSEIAGYSDKGETWSFASIDRIDSNKGYSYDNIRIISHYANHLKNVGNIEQMRRLVRYMDKQNSYF*
B570J40625_1000244156	F015718	AGGA	MDDINEKYPVTNVMWKYMDSMTLGEYLASLGVDYKSYGFIKGFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVNGKSVYCVDVLN*
B570J40625_1000244158	F078244	N/A	LIFYVDGNFLFSLMLAVLFIEIIKLTGAFLNFLYIYVYMKDIINETFKKHLKLLHGRLNENFDEDAYDKVDKFIKNVVMADSQMELMKNRDSLILIVKTFMEAIGRKPYSDRTVEIHIDAVMSGSSRYVSRLDNPDIVTPGIGGKTNTSHMDVEDEDDDAAGKRLGYNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100024415

Overview

Ecosystem & Geography

Associated Families

Sequences