Scaffold B570J40625_100012891

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012891
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14930
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002643	Metagenome / Metatranscriptome	540	Y
F038238	Metagenome / Metatranscriptome	166	N
F062755	Metagenome	130	N
F066770	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001289111	F066770	N/A	MKYLFILFLFGCGVSAQKIDKDIEFEELMKQVNATNAKSAIVLQKATKKEKQLVTNAVATITQMKSEISELKSEISQFKVDTIYIHDTVLIKEKKNFWGKTKTDTTN*
B570J40625_10001289121	F062755	N/A	MKVEKKEVVCIRLPESIKKKVDAEAKKMYLAPSKLVSIIVQKYYEKL*
B570J40625_10001289122	F038238	N/A	MLENQGKQLKLHQRASCLLELLKKAQSEQARQEGLLAEWRAAGSYDNVRLFTHENNYLIRLAELNDIQKRILKSYYWLVVELYDITENFILPVNRVQ*
B570J40625_1000128917	F002643	N/A	MQYNKLNVLVASINAVIGNAESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKESIKKLTAQVKELGEKEFDFTPINVVNPDGLEIFTFLEEWTSGIEFIKEIEEEL*