Scaffold B570J40625_100012827

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012827
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14974
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003904	Metagenome / Metatranscriptome	462	Y
F008356	Metagenome / Metatranscriptome	334	Y
F011485	Metagenome / Metatranscriptome	290	N
F014128	Metagenome / Metatranscriptome	265	Y
F016799	Metagenome / Metatranscriptome	244	Y
F056337	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001282717	F003904	AGCAG	MNNIILNIKKYLFFALLPTVILVILSISSLKDIEQGYARFRLGRDITLYLRKSTDLLTYLGVAYTTTSDKKFLDQFNNHLKEREKYFNEEIFISKILTQEELKEFRKGLDISSDLAKDVENPAFEKMDNKTFFSDKYLDYKRRIIENNQNFRTLINDSSEKIIKDEIVKLNIYLYILCLIIILLVYLIKCDNQPIKKKTIKKKKK*
B570J40625_10001282718	F014128	N/A	MEYLQKMGIQIGFLISGLFGAILMATKNEKTDVKSVVLSLIGGMCAANFLTPVLGDMLNITNVKHQNGIAFIAGFIGLKLVEIVSENLLQKLGHKSKSKKTTKRKRT*
B570J40625_10001282720	F016799	N/A	MKMAPLTRQYHPSIVDTNLDIYKVKDRVMAAPISPTPDPFQVTDILGSNRINETKIKIVVYNSKGLFYFI*
B570J40625_10001282721	F056337	N/A	MSDKYENNSYDAVLSRMEQKLDTISDNIDDIKKSHKDLETRVAGLEYFKYYLAGIVAAVSVGANYLMNKIKGV*
B570J40625_10001282722	F011485	N/A	MIKSFKLFIVSVLASVAVFAADAEESTINASINAGYNNHYIVNGLAKTGGSAFAGFDIGKTYFGVDAYVGGVVLPNSNNIDESHWKVGVGKALKITEKFSLRGDLQVLRHQSSILGGRNSTEIAPKIALVNPYLTPYIRGSHDFNLGQSGYIVGVERPTDVFGWFTVTPAVEYGKFTDYDVVAAKIGVSRTFFNHLQPYAEVGYYDNNFQSSKYNFARQEFSGDVVAVAGVRWNF*
B570J40625_10001282724	F008356	N/A	MNVSEFERNKPVNTFRKIKELEKLIKEEQIKTENLYANRIATLDTMLKSVHDLMESFKKGE*