Scaffold B570J40625_100012245

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012245
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15386
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F071242	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001224510	F027518	N/A	MNTENEIALIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARFSGIATAAGVVGGLIVQLILKLI*
B570J40625_10001224518	F041764	AGG	MNIEAGGFLKVELFNDDATLFLNALTKITNESGKMGFKSYGLTEEEMKTLNTILDNLG*
B570J40625_10001224521	F071242	N/A	MINMENKSSAMVACLEFIKLNMKSNSEFGRIANGKRKLEMWKHYAWKVTRISLNVAFWIFILYKLLS*
B570J40625_1000122454	F019140	GAG	MTYEREREIVNSLATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKPNEEN*
B570J40625_1000122457	F021113	AGG	MRRNILAALLLFIGTSILWLVICWNIWGKVHANNATTELQTQDSVINYNAGEYDRLLTEQIELYKQLRTYEDAQLTAKTTYQRTRSAIIIRDTVNIVDVIHLVNSCDSVIASDSLVINNLKEQINIEEEKIDNLQETVKAYEQKENILTEEINNLAADKKKLEKQKKRRNHALIVTTTVAVLSTFVLSILL*
B570J40625_1000122459	F039140	N/A	MKEKLKTWLTEMVTSSTKVSSKRIIAIFVVINLIAFSYVATFTTYIIPIAMFDTLAILSGGLFGGTVIERFTKQAKNGNTENTSEINS*