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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100011424 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16021 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (71.88%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000332 | Metagenome / Metatranscriptome | 1283 | Y |
| F002933 | Metagenome / Metatranscriptome | 519 | Y |
| F004432 | Metagenome / Metatranscriptome | 438 | Y |
| F012435 | Metagenome / Metatranscriptome | 280 | Y |
| F065786 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_10001142422 | F065786 | N/A | MVTVTKEGTAQMTKDDLISLLRMTGAQENSIEAVCAAYDAGWNDALDDYAKRIEPLPFGKVTIDSFSIFIKDAKK* |
| B570J40625_10001142425 | F004432 | N/A | MVTKKAPAKVAPVKRRTPRPKAEQTINVSLAAPAAAKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLLKDVDGIVLLVHKANLSTNSRTTVLALNADGSREKSIEGSITSLFNASSDRNGAMVAMLNGEILCEEFKPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKDKPEDIAALKTRINLAATDMSED* |
| B570J40625_10001142426 | F002933 | GAG | MIPPIHKWYPMVQPEGYPNKTDALERRAERLEEEYKQALKMKKVKDKIDNLEFELYVKKAERNQLNLEIFTNRKIDILV* |
| B570J40625_10001142427 | F000332 | N/A | MRWLILLLLFGLVGAVAKNGCHVREFYGIGYTVHDPTERHFKMLAWLENNAKHCKASDYIVMWNNLSEWAGSADSTWLRAAVIHGYKEAQEREK* |
| B570J40625_10001142428 | F012435 | GAG | MAEIDLVKYGVLWQKVESMEAKIDKMEAQLDTLIELANKGRGGFWMGMALVSGVSSIFGYISHYWSK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |