Scaffold B570J40625_100010166

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100010166
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17123
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F023350	Metagenome / Metatranscriptome	210	N
F039140	Metagenome / Metatranscriptome	164	Y
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N
F082704	Metagenome	113	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001016612	F082704	AGAAG	MASSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFYIPESKVKLTEQKSTK*
B570J40625_10001016613	F019140	N/A	MKQTPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKTKEENGEQQN*
B570J40625_10001016617	F012871	GGA	MLRSASTTTLTTIQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELEKKCEHYGALSVSFIGDVLTAYKPHRDKANLQIQREIAEAKEEESKQLKEKEMAVNDDSWRRMLAEDIASYKKGKYTVIEIRAASLMRWLEESKIINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVDRMSDRKRMLLKESIRFEGMRELYKLYLSKQ*
B570J40625_10001016619	F091602	N/A	MKSELIFCPNCESKELGERVDEVLRDQQLEDWDTAYEFVDDEGEIKVCFDCQEWDDADDDAKGEGWD*
B570J40625_10001016621	F049635	N/A	MNKQIYSTPFGRLVKINFKTLTNFKAALRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
B570J40625_10001016624	F045753	N/A	MYCPKINYCFNEDDIRTLNERIKSIANNYNDDQTGWFEVDEKQHLVFVDEQDNMFTIHLRGRFFRSDDPEFDLDYVTLEKDGITFSFDINIFDDHV*
B570J40625_10001016629	F023350	GGA	LTLDHYIEGRYKHFKELAYSIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRELSKQTGIPTPFLYRTIDNIKQKIRANVIRKTQ*
B570J40625_1000101669	F039140	N/A	MKEWLISLLSSCSKVSSKRIVAIFVTINLIAFTYVATFTTYVCPIAMFDTLALLTAGLFGGTVIERFTKQAKNGNTENTSEINS*