Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100009910 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100009910 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17326
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (96.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17326

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (96.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040597	Metagenome / Metatranscriptome	161	Y
F054848	Metagenome / Metatranscriptome	139	Y
F087184	Metagenome / Metatranscriptome	110	N
F093301	Metagenome / Metatranscriptome	106	N
F101152	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000991019	F087184	AGGA	MSIETLVAEITLGAHDSDLIRLKDAIDARLKASRSSRTLADFNIGDTVVFNDLTATRYMVGQKATITGMKQKKVTVRLETPVGRFAHVNPVTGKVESSNITVPVAIIDLVK*
B570J40625_10000991020	F093301	GGAGG	VTTLVAIQGDGWSVIGCDSRSSDESGRYLEMATHKVVENNGILIAGSGAGRGSNILQFGWRAPKPKPGQDLDVFMTKTFIPSMRKVFIESGYDMKADGEAAAHDSEFIVSIHGVLYPIYEDYSWDREERNVYHSGSGSDLALGVLEALNYQKCKSAKEAEKIVYRAVEIAIKHDIYSGGNIHTFIQEE*
B570J40625_10000991025	F101152	GGAGG	MTQGTNQREHNYVYAACSVCQDYALVYELNDSLLCAEHYRDRTRLIKRATPCDKCGADNAVRDPSHRRNEYLCWSCHQENGFVVNDSVIKRAIVSLVNNFTRGSKIKCDAAGYGSDCDNNVKPRGPWGGRALCDTHGKTPPKPQKGTKS*
B570J40625_10000991026	F054848	AGGA	MTTSTVTPNQAAQLYSDGKSVDEVAQALGITYGKARKLIAESGTDIRNTSDRLKGKTRKTK*
B570J40625_1000099109	F040597	GGAG	MARNEAAGIWEIRDVHTGERISKFRARKRADVTRYLEMARIGLKRPIEDFEAVFITEWE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100009910

Overview

Ecosystem & Geography

Associated Families

Sequences