Scaffold B570J40625_100008374

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100008374
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18952
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007305	Metagenome / Metatranscriptome	353	Y
F054798	Metagenome / Metatranscriptome	139	N
F056376	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000837411	F007305	GGA	MKIIQKTIRKAYQNWNPTKQIRCYHYCAAFAGTKLISFTQNNPIKTHTGAYRIGEDFNLPKYKEFPYYHSESRLISQLLDRYNTIDPNWTICVLRINRKGLILGSKPCENCSKLLSAVGLNNIYYSTDDGNFSDSIGNLITVSELTMPMVMV*
B570J40625_10000837446	F054798	AGGAG	MIYLYLNETQRLAEIVAELVKLNMGVVAELHGDRWHIEVTK*
B570J40625_10000837452	F056376	GGAG	MTLIQCFSNVSGYKEANEIVIDLNQMKSDESEGFYIKYDRNQDYSKDDNYLVVGNVTQADWDELNLDMDFIEGLA*