Scaffold B570J40625_100006962

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100006962
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20895
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (45.07%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F016115	Metagenome / Metatranscriptome	249	Y
F024040	Metagenome / Metatranscriptome	207	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F032572	Metagenome / Metatranscriptome	179	N
F035215	Metagenome / Metatranscriptome	172	N
F044916	Metagenome / Metatranscriptome	153	Y
F048121	Metagenome / Metatranscriptome	148	N
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F066486	Metagenome / Metatranscriptome	126	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000696210	F016115	AGGA	MVGRDGDVAIYKKQLDDPESENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCVSREDADKRFVQLQEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS*
B570J40625_10000696214	F010897	N/A	MKLINTTSYCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRKGYLNVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRRSNFKLNLV*
B570J40625_10000696216	F035215	AGGAG	MKSSEQIVKEISDRIDEYKGLMIDHDNNQDAVNELESAVHELENLLEWINE*
B570J40625_10000696218	F025679	N/A	MTKTFKIGETALGGTIKVVIPKTLTTIKIDVIDSNYSTKKLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI*
B570J40625_10000696220	F032572	N/A	MTTYKYISDYINKPTIFCYILDRVVNNNPYLFGGEYNEKLINKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV*
B570J40625_10000696230	F011914	N/A	MITSNQIRALDENELNYLYYCCKSEWDSKNMGYEFDWYILKSFRNKAIHPMLNKYSDNLTDENKGLIMQILNKLEENI*
B570J40625_10000696234	F026210	GGAG	MSPILGANPLDYDATYPQVAQSANDDAKIFIMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVVVDRNGTPWEWYVREEAIHFVEEIRNIPCGIVYSPNKL*
B570J40625_10000696236	F066486	AGGAGG	MKAKIKDPNYLKIGKFKKKNVYDVDVDMSEHNRAYFLDLGKQVITDDQFINIGFNYALIKGLGEAKKVKSKKK*
B570J40625_10000696242	F048121	N/A	MNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSAK*
B570J40625_10000696255	F044916	N/A	MGKKKADKSRIEKGLEKEEKTFASMAKKIVDAIKDEKSLREFTRDCLEELYKDNPKLFADHAKIKLIKK*
B570J40625_10000696256	F064403	GAGG	MINPRSKILSDLKRAYLKEHPVTLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*
B570J40625_10000696258	F032548	N/A	MKKMQNKDMEKAIKLMEELAIQADEDCPHDCRTMHFSNALEEAIEFIKEYKNAK*
B570J40625_10000696259	F027756	GGAG	MKLEDLIDRKILFINYPINKYAIQEGKVSEISPAKKCIKINSDWHLIDNIRIIELFKENERPKLGFGLPTNEKDAK*
B570J40625_10000696267	F104482	N/A	MKKQKKRMTSEEFEKAMKAQGRLISKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR*
B570J40625_10000696269	F032536	GGA	MNERQTLEELMQDFRFHKNPILNWVLENNNYLYHTFINAKWKVRNTFQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLVIDDKIVPYVGKEDNFEFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD*
B570J40625_10000696270	F062447	AGGAG	MKHKIFWEKNSRVKGIVPPEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWGGTNYTFAETKLMVTFDKDNEGYSFNGGLKSYSLQDLKEVLDSVRETLNKI*
B570J40625_10000696271	F024040	N/A	MNVYVSGHNWLAKVDIEDSIKKSDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEQGL*