Scaffold B570J40625_100006505

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100006505
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21628
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F013404	Metagenome	271	Y
F087104	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000650512	F087104	AGGAG	MRNDYTQRPRPGFKAGGKVKKKGGFPDLNKDGKTTYADVITARMSSKKKGKMMKGKR*
B570J40625_10000650529	F003803	AGGA	MKKDKTLIRFRIYDGEKEYTDYSIIDNKQLLEFTQREIISKFFYDNDVSKEQFLSDGRAVRIESEILITDDEAEKLEKLSVAFLHDFKLDQMA*
B570J40625_10000650532	F013404	AGAAG	MRNIDKIELATNKLENTFLEQKNIARKLMTEHRQLQDALADLLVNADEDCPKNYRTEHFCKSISDGYSLLRTIGYFRKKVK*