Scaffold B570J40625_100004679

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100004679
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25547
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (6.98%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F059678	Metagenome	133	N
F061576	Metagenome	131	Y
F067450	Metagenome	125	N
F075991	Metagenome	118	N
F082207	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000046792	F046994	N/A	MIFRKRNRAEQNESNYQKWLKTYIPETTKQRIELTRVFTDRAGNNFYILKNPANLTRERAQRIEEAMTAIDFGIHKTEVVEKLNGILETVEEMPWQNMTRDKLKEFHTKSKDQLNDILYRLKSVKLDDLLLEAGLYFFYIDGENPYIINSETQQRKMEAIKKDDELRAFFLNSIEQILKGSSASNV*
B570J40625_10000467938	F075991	N/A	MTNDEKKAALIDKIGEQKVNELTQNIWLLLGALSTAKYAIAQFEPKKLKFEMKKRFMDLHTSINLFVNNFEKAATPTERELLNESTYDNVAVIAEVVAMASTLPESQSEWYLNECKKLLFLAYNKSQNELRSESGE*
B570J40625_10000467939	F082207	N/A	MNCVAKAVNKLFPNQDLTEFYDRKLGVGMGDIQRMIPTDLSVWAVYCNHHKCVNFDLIRQLPKTEHFIPLFLFSSVMSDRFKLHCEFALWDRNTVIVNDIEFDADEYFQRNKILQVAALIKFETHEILIAKK*
B570J40625_1000046794	F059678	N/A	MKTLLFILLFSAAAYAQTDTMYCIQILSTRHPEFIRAEHLAMCTIEQAQVEQTDGLYRIMFVYNTLEEAEIMLTTWKRAHKDAFICRRTSQQVLNFYQFYTYD*
B570J40625_10000467941	F067450	N/A	MLYLITLSIFAAFAIKFLHYCIGSPIQGEYYSGRIFSAYGKFISKLYLDFEAKEKNRVWAKYNAWKQKRDKELNEELQNKTANEADTIYKEYLQQVESLYNDVENNMKNNPWSMLGACPICFGTWVSLFTFTFFVIFVPLPWWFIFIGTPTAVIVSRYIKIS*
B570J40625_1000046796	F061576	N/A	MQTESKSIRELILSGHSDNIELGLILNDSFKCFPLTRKFYRKHKRFKFWQPSRHYSVLESESRYYSWVSLLNNELKTHRAYFWLDFKEPKYKTPWEHWQLHITNHFKWPYNGPMFTGGGHPYTTMFIRGHNL*