Scaffold B570J40625_100004570

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100004570
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25837
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.20%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037228	Metagenome	168	N
F051121	Metagenome / Metatranscriptome	144	N
F051919	Metagenome	143	N
F059973	Metagenome	133	N
F060916	Metagenome	132	N
F065438	Metagenome	127	N
F065788	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000457010	F059973	GAG	MPVQDYLKLTNSDKLEIERLLFETVKEEMENVFSFLTVEKIEFNDYWEKLDYDAERWKQLSGFALSNGKTYLRLPNIREFMESEYNDINFTKTLYDIQENVFEFFGLPNTVMGVIMAWGDEDYFD*
B570J40625_10000457013	F065788	N/A	MDLSNEQILQIIDFIVNEDNCDTGVFAKFISESNYWSIEGFSNLIKTTKRIFDLDSYDIDFLFHVYNDNYDLILKDNLNAENMVIPVRNNYTITTKCMYNKSGFEYYESEENIYSLKSIYWKYDNGSFYPNDGRLVDDDSSDYEMQEWEIYDSSIKNNVKESKEERLKKLLMMKEIVDRKIKELL*
B570J40625_10000457019	F060916	GGTGG	LTDFRLIPKIKVDIVHLFFIIMYMNNVDIVLDYIKTFYQVTVIKGDTNMIMFHDCIEIKNTSQVHFVGSAFGFEIYLVWDKAQIYTNIDIYKKESSESVSEFARKIKNVQTHSFLKYLSESLNKFDKQIQLHLRDVPEEFPGLYDDHEIMDNSMYFV*
B570J40625_10000457021	F037228	N/A	MSFNNLKKNDVVFSESKGSRVFKLISKKDNHWVVGDMFTKKFDIITESDTFRVVKTENKPKPISLLNLVESNGISIRPTLTEKEVFIVEELKDSYEENDLHDVIERYENGELNSGDDLLKQYLKLLNFNSRLQYDSFALIQYVYCAIENYDTEISTSTNINRFKLFELLATEISDERKYQNWSLKVPALDLDMMTKMQSGIIADIWQYDPDAGSADYGDSDFIGMSDIEIQEVGLSEYRKPLVIE*
B570J40625_10000457040	F065438	N/A	MDIEKLIKDGDTEELQTIIKRYFNNDYELFFQYVIDEGYIEMTDSIDNSIYDLYPKNIIKYWINKDPEKTIDYIIDRHLSDVKKENGKYYMELSDLSDLKFLFRSESKDYVEGILSNDINTYDYNFSDFGMKVSDLINDLDKQSKIQMSDYFSKHVGQFVEYNGDDDTISSYVESDESGDMFKLTQERLEEIMSDNDSLSSLLNDSPEFNELGFFLTNAYGDAYSTAERDAYYNKTMDELKDFFETQDLGYWGTKEGYTYDKEGKRIPRMKDIYFVNITNVIKDMIMDTVDNRMSDFDDYNDFENLGSFESVLREYYADEIRVNFDRVSPDYGDVDTLFNEYFRDNI*
B570J40625_10000457041	F051919	N/A	MSNENVIYNPYYGDNLCNLLANSIVEKIKSVDPKLYVNISVTNVNSFFMTCGETEYSEPLDITEIFNSVMENVPEPLKLIVKVFDLISYNTKRVPNTILYSEQFSKYKKTLSENFTKYSEILKLNKKECYTNIKCFNTDVYIESISNINEVKLPKGYIDWKPNTKVFKSSSIFGKDLYSEKYIYMLFRYIAHTLFEAGLCNIVKLSVNTNNPVDQLYWDNVNFEIDSEYFLSSQKWTKSLVLDIFNFEVNKVIEDLNLEVYDFANEILHDNENYPWLRNDKLNDIVLV*
B570J40625_1000045708	F051121	N/A	MVRKIKNLRETLLAVFLMIWAIMMVFVVINLTGCSNPQTQFEKHVTTTTVDSVWIKKPGEINTLQFDPVYYAKTKDSGVISSRTKFHVGDTIKRIRYTHK*