Scaffold B570J40625_100002507

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002507
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34300
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032657	Metagenome	179	Y
F035305	Metagenome	172	N
F037724	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000250736	F032657	AGG	MVVIEDFIRTSYPLYTIEEFRIAFKMAVQGKLDCSTEHYEKFSPKFIGQVMSAYTKKAIEVRKMIKPILSTIEPPKLTDEDIVSFTQKEWLQSPKNDFNRVFNADKVFAILLRHGKLKFEPSEMLQIVSMVREDNLLKLNKLYGQDAKEFSKRIKDDNFIDSQCKKLALVKYFENLSG*
B570J40625_10000250743	F035305	N/A	MNTLAIWEVAPSKSEIEILAQNVANELNDGTMKAEDVAIKISVMENFTKTLRAKSEEHIIDFLDKCPKGKYDYLGASLSLKDSQTYDYASYSPRWAELQAQIDVLKEEQKEIEETGKKFERGQIPLKSYKQSFTITLNK*
B570J40625_1000025078	F037724	N/A	MNPKEALKQIKALFEDMPQVVEPVAPVEPTVTKVEMAEYSLVDGTKVMISALEIGGMVEMADGTPAPQGEHQLLDGTIIQVDELGVIVEIASPKEDVIEVEPVAPAEPVEPAQDTTAMIQELKDDYEKKKMELDAKIAKLESKVKEGFAQVAELVEALSNTPTAEPTQKAANAFQSYVSTNDSKYERLEKYRNAILNK*