Scaffold B570J40625_100002299

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002299
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35590
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (24.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F060610	Metagenome	132	Y
F061497	Metagenome	131	Y
F065376	Metagenome	127	Y
F065768	Metagenome	127	N
F070850	Metagenome	122	Y
F079784	Metagenome	115	N
F085061	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000229912	F065376	N/A	MNAANIDNISEFYKALNSTEVLRAQSMIEGAPSIIEDKLTYDMSAESIKAANDAIKHIETNRKMVTLPLDTYKKSVMEVERDATAPLRAYIDQRKQMMIDYSNELAVKKAVADAKIAQDAADALKSAVTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWATLLWTLMQAEMFDIQELLRKLPKAMEITNIAEIRGIELTEVKTQVIR*
B570J40625_10000229914	F085061	N/A	MSPFDNIHFEFTQFNRYLDTIIDPREADNDTMEAKVKEAIIQAYSNGFQDGQKAIIDKFPRPSSQGGDEGGREYYDSL*
B570J40625_10000229918	F033329	N/A	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETEPKDMPPNAKLIYDAIMNHPMLRLVFEKSAKEITFIKEIEIDGRKVAAKGILDLHCPMYSINADIKTTSCTTLRAFAKDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTTEEIDTAENLIRDYLVHRGL*
B570J40625_1000022992	F061497	N/A	MIDITLEGGYVTFYTSVLGVIASNVELCEVVDENTLHLGTNVGTFLINVNQFTFNGIKFTDSTKAVNYILNN*
B570J40625_10000229932	F065768	GAG	MSVCSPCYDAGSYVNACLTEFTFGIVEADTEFTVWLQHNATQKIMQFTATSDAEGYITIEGIQLDPLQGYTIWVTIDGVEQDITVDGDIYKCLSFSAASVGQSPVVIP*
B570J40625_10000229934	F025680	N/A	MKYIKELKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLKDSLFRLSSHRESGRRKQETT*
B570J40625_10000229940	F070850	GGAG	MTKELSQTTQSITPSTGVVLLAFGKPQYYWAAYNLAFSIRKHSPNVNITVLFDNPIKGISHCQDFMQYINNIGSIDADDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELSQSGKNYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNNPIPIKELRMKWGGGQPDELYMNVALAIHGIDPALKTYSRNDGSEGGMIHFSMQRGLSFEKITENYYLQSYYGGAGFTPIFYINWLDRMLNADFKAIGKRHIYLISRISQNKYADGKR*
B570J40625_10000229944	F008936	N/A	MASFDELVKQKIKLLETVPEEIATAAERTQRQAWRKLAPLLSEMDVDAQGNITQTEDNVRRIGLITEELNKVLAGGEYRAAVQSFLASIDEGVQLTDDIARKIDSTFEPDNVQRQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGAVFHRKEIEAWGNGENSAGINDIRNGTWAGRIEGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAKAEGYA*
B570J40625_1000022995	F079784	N/A	MAARRVSKPRQVLDIIVKYWRPTIGSLVILSSVFALIFKQIGTETLAAIVAAMVAAGYIPKANDNG*
B570J40625_1000022996	F060610	N/A	MTMDEGRDSTYTTIDEGCVVGIGCKVHTHHHTIHIEPQIVYQSMEKFTIFGRNYCTNQWGQTYELPAEEPMLEPQPMQQTYASDTITPSSSAFLLAPKPEAKIIIKPRTEFTEYKPTMDGPIMGMLLTFTIYLTVQWAWSSMGAWNNLYSELSACLRSSS*