Scaffold B570J40625_100000954

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000954
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51801
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (51.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F063494	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000095430	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDDRFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVQPQLTADAGKRVLLQGLDPNGNPIRTLDTVTGEYVWGEYVTLPNPAVTAYVQTVNLFKQPGLTGAQKPLTQGSLTILAYNQTTTLQTQIAVWGPSEQNPEYRRTYLIGMPEVCGGTSGCNAEAQNDCIDHGDGCVPADENCTNTVVEAIVRLDFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELETYSPNERTVVNVQVWGSAKIQYRLGGFI*
B570J40625_10000095433	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFDDPTVVYNNGYYNAAVKKAFEKGQFQGCGTYIADNTDPFLFASVGGKVFQIDIKNGFKVTDLTPINFTFQVQTRGRVSNVATYVCGVPHGLSPGMVVRLTEPPGAFFPDGFFGDFIVETVPSATTFTTYSPGVDAGPLLGPAFNCYQMATNDPQGSHVYFQQAENWLVIQDGQNQPYLYNGSTLRRATGEEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPSYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTDFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVLDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTVRVKRTERCFAFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLST*
B570J40625_10000095449	F028149	AGGAG	MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELAGSLVGGNSFACAAGLPPINFSWVGAGYTTLRVTNNAAAAITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLSKTNASLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNATATAGNYTLVLPYKNVAATEGIKSVFNEDYDKAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQSYNSEDPTCGVVVQFTAVANDAGNFVIGTTGILCDENIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNVIQLAGSAIGTTTEVVPCTNVTLEFAI*
B570J40625_10000095452	F063494	N/A	VKYVPIIYQDPTFRAAAITQALRQTAPKHLSPEATYRFYELLGMICGSNPPTPDQLQTALLEANEYDLNSED*