Scaffold B570J40625_100000509

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000509
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65527
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (72.37%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F005054	Metagenome / Metatranscriptome	413	Y
F006841	Metagenome / Metatranscriptome	363	Y
F013888	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000050926	F005054	N/A	MAEILLNSQSPVTHQIFWNGDIAVPENDPIVKVYDVTNDPAINPPIAPTTLLETLTAVADETNPGSYTVYIPLNHTNRNKTLRLKWEYYIGEKFVYKEDEVFVVTPYVDFNHIEDLGISIDPSDPNYKSYKELCRAEKYARKRIEEYTHQKFYLYDESYSITGYNSDVLPLPAKMYDLHELYANDILLVNNIQGINNWNYNVEIVTTGYGLRINRAAMLDNTVYTANGMVPPSIHDSSGVFRSDTTYEVNGRFGWEKVPDSVELAGIELMKDYFSNDINWKNNYIKNMSTFDWDFEYNVDVFRGTGNAYADKLLADYVLSGAAII*
B570J40625_10000050927	F001229	N/A	MNTIVDAVLSMKLDVYRQTDEQDPDTGAIKKQWIFYKTLPCHAKGVISNSSSTRTSDKQVMGNKYYNDQVLQIRTAQRLTLREKITNIRDANNNYIWTEINSPNDTPTVFEIMGTTPITDPFGKVIGYNSSVKRSENQQIGF*
B570J40625_10000050929	F000258	GGGGG	MPNYKLDAVFELRKFLWEKLKAANIFNPNDYYSDNLDETIIPILPIQQAPEMNQFLSGKKHIVYDKVGLSYENNWLICCEQILFTIYSTEVIDIVEIRNFMTDQFRRMDDSARDVNYWDKLSNKFKFHSIFIADISPTAPSEELQGFFAADVILEVKYSRITDNNGRFA*
B570J40625_10000050931	F006841	AGGAGG	LATKVYDVEEIELQNGAKVKLKPLSIKQLRKFMEVVKKTQDSNDENVTLGILVEACAVALETQLPDLAADREKLEDALDVPTINRILEVCGGIKMDDPNLIAAAVLAGQN*
B570J40625_10000050945	F002501	AGG	MMKCGKCKGRVFVDRVFSQKLHVELFCIMCGKRWMINKDTSSLGRWLEQAEKNKLKDLAISS*
B570J40625_10000050946	F001464	AGG	MVRASRKKQTKRFSYFFLNNKIHKVLNYSRAKDELIAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQVLNKHKITIEDYILDGKIKYPQKVYPIGNPESDWYKFMYSESDIMDIHQFILESGYSKNMPSKNELRALLKHNTILYTKTTEGNFVPVWKAD*
B570J40625_10000050968	F013888	AGAAGG	MAIVGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRIATRPEWVPIVQNMDMNIKLMVREPSTMSDAINFMIGECNDTVMVGMPDTYILNAPVNIYKDMTKEDKADLVLGVWECGEDIKGRVGQVLLSGNKVIGSEDKVDNCDYPDMWGTMLFRKNMIRYLDPKLDHPGKQLKDWIQDGVNIRAVKPGGRYMDIGTLKGLKQLYKEMDNA*
B570J40625_10000050970	F000369	N/A	MDIELADHFDRMNKVVEELLKGNNPTQIATVTGFKRAEVIGYIDEWKEVVKNDSGARDRAKQAISGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQEILVKILKEVTATCPKCKMEVAKRLSQITGVVEPVVIHDEQEAL*
B570J40625_10000050972	F000376	GGA	MSIYQDKAKECKCCGKHVPLPVRLKEYNGIKVCPTTFDNIMEYKKIWNESGKRPPGSIRKHFSDYVQQIVEKSIDNNQSTNI*