Scaffold B570J40625_100000218

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000218
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90615
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (15.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017300	Metagenome / Metatranscriptome	241	Y
F028802	Metagenome	190	Y
F030766	Metagenome / Metatranscriptome	184	Y
F031491	Metagenome / Metatranscriptome	182	Y
F078724	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000021833	F028802	N/A	MNKTMMLVTGSWGNNKTFKLIPATPDCPYNEAIFDRDSKVLALIGREKKQSFHMLPKLTDLGDVQTLKIGKRSNGKDYAEERKALETYYEYYIENPTEIENIVNLLAVNADSFDFKQYMETAYQAEPSSLVTV*
B570J40625_10000021834	F078724	N/A	MIESLYTKYFQKSRSFLYPALGIKRTAHFSPSGTYVAIEGLIEPEDTKLVCAFKEDSTAGFKAFEEQMLLSNPLFFQVLQIQDYNLYVFDYQTYTEDWFTFLMGRYSKLSNVLKRAIKSYYGENSSEYKYIESYLFPDRYFENYAKLLDVEASVLKKVGELCDPCDLDKEKLKIPVDNLENLTKKSINL*
B570J40625_10000021844	F031491	N/A	MFNTAQQQNTTAFDEVKELKKQKLEEIRDYHQSLISNLGIPRTDFNMKMPFYDKQARYVVGIFASEFRKEKGFYFELITRDLEPADSNRTVYRIPFNSSFEEEYELNEKGSYLVPLEELRAIDAQSVAVSGTSALLEKPKQGPKPTAAYKAPAPMEDAPYGEMTIRDFYAIHTGKPVSTKNWLNELIKSTK*
B570J40625_10000021849	F030766	N/A	MAKKFYAQKDALGWPIPGTMMSGAKVPANLIEIPAQDVTPGANQVAVVHPGDLRYFVRKDKKGNIIPNSLIISLKKPAGDVYEFKLVKAS*
B570J40625_10000021879	F017300	N/A	MKSKVVVTADANGNVIGVSENNPEYGYVRVEQSGAFINDQGWLRISKRSALIKGLVKDLVEAGFTSGQELPGKIVVVESLTPFNTQNPDRDLKIAGGTGVVCRIDDEPIYRQTFYTTNQELNDHLITHTNAEEIKEVQAAQKAVSALKNFKRETVAEL*