Scaffold B570J40625_100000163

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000163
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101865
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (84.52%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002060	Metagenome / Metatranscriptome	597	Y
F015988	Metagenome / Metatranscriptome	250	Y
F018349	Metagenome / Metatranscriptome	235	Y
F024549	Metagenome / Metatranscriptome	205	Y
F029721	Metagenome / Metatranscriptome	187	Y
F043932	Metagenome / Metatranscriptome	155	Y
F047643	Metagenome / Metatranscriptome	149	Y
F091432	Metagenome / Metatranscriptome	107	Y
F099174	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000016311	F018349	AGGAGG	MDYREGFEDGVKFTREVIINNIRRWAEAHDDGAVLDWVADKIEFGTLDHDL*
B570J40625_10000016312	F047643	AGGA	MYYQLQAPSGAVCKAAYWEAEFSGLDPYYLEDNAFELGTGSIEKVSALISKYKLDILVESDYQPTGYTRR*
B570J40625_100000163133	F099174	GGA	MRKLGASLASIMLAFTVTSCNFDGSFRYECQDPANWEKAECNPPICETTGTCSRDLVGQEVWDEYQKSKVKNG*
B570J40625_100000163140	F000473	GAG	MQSNLYDNKHFKHGVNLWTGEPNKPVFYNDEMRKKLREIKKPLLLMMDVVKYPEFLALRLYEDNFIQFTGSKKEEVIDYVMKVKKMIESHGVRCELEGVPSERSIT*
B570J40625_100000163142	F000671	GGAG	MEKILCASCNKSKNKLSAKRSSLLSINLLMCQTCIDEKLEPKWVIIISGRQYGPEHVKDFVQKRKYLGSEITASELLI*
B570J40625_100000163143	F002060	N/A	MQIDYITIVLTLLAAVLSGLSTAIIAGFRDAKKEKRRQAERETDHLKMEVKDLKIDLYKLEKELTEWKDKYYDAVQELITLKGELENALNMLNHIEMHEDMDSEYLK*
B570J40625_10000016325	F024549	AGGA	MYKLTTIYDGGISKETYGFSDALEAFEAFARCKDVGFAMENATYNLTLPNGKMYTKNFDRTGLVSQK*
B570J40625_10000016327	F091432	AGGA	MDLKDFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN*
B570J40625_10000016328	F029721	AGGA	MKTYSIEDLLVGQFYRPSSLARRFHGGEIDFAEKRDDVWVGTDYQAYAIRYRVAQSIKTNWATIAVKVSDL*
B570J40625_10000016350	F043932	AGGA	MAKFKSLLNLVTLSADPVSGSAGDVYFNVTSKNLKIHNGLEWTDLTPGSTDPTPFYMHTHTYDGDVHTINLQETINFTTDINDDASVNETIPAIIGLDGGAPNSTYDNVSATNVTLLDGGEVGN*
B570J40625_1000001636	F015988	AGGAG	MESEYINRKTKIVEYIKLHVISLEQDLENIASEMEELDPESKACKELDFEYNHCSGQLLATRHILSVVEDIL*
B570J40625_1000001637	F000868	AGG	MDKGSFLENENQMVIDAEMQTIAEQLLDDWITTNLDEGTLYSDWRIADMSDSNYLKGRFNLFYDLKPEDDYYIEWDEEK*
B570J40625_1000001639	F000450	AGGA	MGDRANFVFVQPSGETIVLYGHWAGYNMLENLAEAVAKAQPRWSDPSYATRIAISNMIGDAWASETGWGLQVNEISDNEHKIPVVNWLECTFSLHEEDSFHNESNKVRGMKNEAMFTMDLRAFVEKYTDAKILV*
B570J40625_10000016393	F001464	GGA	MDDKQGYEFFRAMAGTGRKKQAKRFSYFFLNNKIHKVLSSSRAKDELVAWCYPDKKRVLYSYSQVIKNMENAYSTKQVAQILNKHKITIEDYILEGKIRYPQKVYPIGNPESDWYKFMYSESDIMDIHEFILESGYSKNMPSKNELRALLKNNIILYTKTDSGFVPVWKAE*