Scaffold B570J40625_100000156

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000156
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103272
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (73.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F056609	Metagenome / Metatranscriptome	137	Y
F084234	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000001561	F084234	N/A	MFDFISAPFEWFANVVQYSLIFMAVMMLVLTIGAVVAIPIGLKLLGVAFAKTIVVETSKILRDVGITNIDLKQAKENEKMKAWVDRKVVPILSKTS*
B570J40625_10000015658	F056609	AGG	MANYSIYEGKFPCKTCKKEVKTMRVYMETGMASWMCSDKHLSEVMLFKKGYKKVKRDD*
B570J40625_10000015667	F000264	N/A	VELATGHYQTGVRQLELTNNTMAAKLYTSEVFMRKRYLVDKKTPEEIAKECGSSVETIYVYLAKFGLRKSKR*