Basic Information | |
---|---|
Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100000105 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 114550 |
Total Scaffold Genes | 145 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (17.24%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000716 | Metagenome / Metatranscriptome | 923 | Y |
F003038 | Metagenome / Metatranscriptome | 511 | Y |
F025467 | Metagenome | 201 | Y |
F054451 | Metagenome / Metatranscriptome | 140 | Y |
F060624 | Metagenome / Metatranscriptome | 132 | N |
F076922 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
B570J40625_100000105126 | F025467 | GAG | VVKKENISIILTLCLGVMCFVLLIRDPKQVYPISTQKTIEKRIEGKETIIKEKGKVIDNSKLIINELNHGLHDLQSQLDAVKNSRDTFSIVQIQDTMIHTLYRRDKEKDLIISSQDTIITAQRYIINSKDTIISSLTLDIKKIKRQRNWSYILNGILAGALILKP* |
B570J40625_100000105128 | F076922 | N/A | MDTTSVANGAQDFGVFAQLGNYGPAGLAVLALGYVAWIFIKRHLAEKDRLKEELIKTAKKKTRTTKSK* |
B570J40625_10000010553 | F003038 | N/A | MALSTTDLGTGGSGMAKTIAPGNHTLKINSIVLEDFTFIDGAKHMILNVETEPLEGFEGFMIDKDDASKGHYAGQIGRIKASQYAFADGETKTGIKIQRDRSVLIFLQNLSKALGVSDWFTSQDGKHDTIEDFVSAFNKSGVYKDIYLDFCIAGKEYVGKTGYTNYDMYLPKADRGTYVYTETEGDKLMTYNEALHLKKAEVKEVNKFGDDDDNLSIPSKTSSDFSLD* |
B570J40625_10000010563 | F060624 | AGAAGG | MFLAIEFTDKDGSYIEHLNVTHITRISFVNAMNSDAGTKIHLRTGEVLTTPAPMDLISQKIDECWKSAATLVIFNILAEKAKLRSDADNEGSLETE* |
B570J40625_10000010578 | F054451 | N/A | MKYITKAVIKLSEIPEHLQQNEVLQGHKLNTYGEFHIDDSEQDDLVLWLLSEYPTIKRKISFLIHFNK* |
B570J40625_10000010590 | F000716 | N/A | MEKLKEEIRNYQMRSQTVTSYQQDRYNQYQNYLYKRALYGLSALTQDELTTMCSKKKQRVINVYKKAQVVINKLKQQTTISYTNFIFETLFPKSPITQALLAETETDDALINKLNFKDLGIEKSQIITIFIAEGVLPKNFLSLDGPQNQLPRLRNDKK* |
⦗Top⦘ |