Scaffold Iso3TCLC_10046871

Overview

Basic Information

• Taxon OID: 3300002821
• Scaffold ID: Iso3TCLC_10046871
• Source Dataset Name: Iso-alkanes.Hi.seq-Iso3T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2179
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Athabasca Oil Sands, Alberta Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025288	Metagenome / Metatranscriptome	202	N
F031475	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Iso3TCLC_100468712	F025288	AGGA	MKNKWIWITLSVILVLGLIAGAGALGYQMGLRNANALALKGDESTPYPRQLMPGMRDGLIIRRPAAFIGYFFLFPLHLLLGLAGLLLVVWLVVKVAKAAWNGGDHKPKPAEATVSPAATETVVTEAPVSSSEPTSTPESDQK*
Iso3TCLC_100468713	F031475	GGA	MDANTSDGSRDPLCANPQQQREKLTQLDFLTLEMMGTSLEELRELLDEEELQAYFAFLRRQSSDLDSTSP*