Basic Information | |
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Taxon OID | 3300002821 Open in IMG/M |
Scaffold ID | Iso3TCLC_10046871 Open in IMG/M |
Source Dataset Name | Iso-alkanes.Hi.seq-Iso3T |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2179 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | (Source: IMG/M) |
Source Dataset Ecosystem |
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Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Athabasca Oil Sands, Alberta Canada | |||||||
Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.65 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025288 | Metagenome / Metatranscriptome | 202 | N |
F031475 | Metagenome / Metatranscriptome | 182 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Iso3TCLC_100468712 | F025288 | AGGA | MKNKWIWITLSVILVLGLIAGAGALGYQMGLRNANALALKGDESTPYPRQLMPGMRDGLIIRRPAAFIGYFFLFPLHLLLGLAGLLLVVWLVVKVAKAAWNGGDHKPKPAEATVSPAATETVVTEAPVSSSEPTSTPESDQK* |
Iso3TCLC_100468713 | F031475 | GGA | MDANTSDGSRDPLCANPQQQREKLTQLDFLTLEMMGTSLEELRELLDEEELQAYFAFLRRQSSDLDSTSP* |
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