Scaffold Iso3TCLC_10023745

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Iso3TCLC_10023745

Scaffold Iso3TCLC_10023745

Overview

Basic Information
Taxon OID	3300002821 Open in IMG/M
Scaffold ID	Iso3TCLC_10023745 Open in IMG/M
Source Dataset Name	Iso-alkanes.Hi.seq-Iso3T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13830
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Athabasca Oil Sands, Alberta Canada
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.65	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056992	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Iso3TCLC_100237459	F056992	AGTAG	MDASSLSLLRQYADIDQAQVVDARATGGEVIRVPFREMVLPTQALAVMADNLAWFLEQVTGRGYQKAEEVYDAGFTVREPGRSAYGMKVTAEGPVVIIARVSLLEDETIFQRYVNYLRTGVLL*

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