Scaffold JGI25136J39404_1022963

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1022963
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F101893	Metagenome	102	N
F101914	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10229631	F101893	GGAGG	MTFIVIQMENPLDLESISVLPDENDLKVKQFRNEEEAVKFLVKYGMIEELNRDAQIVR
JGI25136J39404_10229634	F022285	AGGAG	MIKIKKPQTLVKWGNEDVTMLELFKELDKLVCDPVRNMQEMDXXMYISDYQKLSQAFWRISNTLQELKDD*
JGI25136J39404_10229635	F101914	N/A	NWTCSNCGCVHWDGLKPISCIMCDNDEFLDGPEKYYKESFSKQTNYVKEKEDDKD*