Scaffold JGI25136J39404_1003804

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1003804
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2524
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F042020	Metagenome / Metatranscriptome	159	N
F092710	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10038042	F042020	GGGGG	MKPQFDLFEATFEEWLDELSLIDYEETPGLKEVLDDLYFEGLTPLDARDALEVYHPEWHDELVYLEEHPIG*
JGI25136J39404_10038045	F092710	GAGG	MTYDTTHRSANWGADVSFGDKRIRYDFDNKWAVSLLWGKNSYGEANEFGQATSYEVAVFTPKGDFLALTEYDDVIGHRTWNEVKFILEKVNTNNAKDLELTY*
JGI25136J39404_10038049	F007828	N/A	SNQNAVMARVGNSSSAVYTIFDLKTQGNTYTGTLNATKKAWNKHYRNSRQFVTPNGSNHRYLGA*