Scaffold JGI25136J39404_1001369

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1001369
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3864
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10013693	F072246	N/A	MKSNSTTSPVTTDYSQLARWLCLYEAVNIISDKAEKIGHSADCLKPIPINKYINERYHSVLKDVEYEFSNNLHTHHH*
JGI25136J39404_10013695	F033600	N/A	MMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADVAKASPETYNQVKAELVPFPGDHLIEQLGSAYKNVSDATYLLNQLFENPSTHLDEKIVKSATLKLQKIQDLIKSVSEDLDHDETDS*
JGI25136J39404_10013696	F033590	N/A	MGKFENKFLSLLKEDEYGVDAPAVAPAIDAAPEDDQQSFTNALDEPGNASDFEDVVDSNPNEQEELTDLQEWISNIDDVLDYLNGGITSVLGKLRNDNKIGTIFADVSDATKGEVLDVCERLASLNQILKNLYIEKHK*