Scaffold JGI25136J39404_1000937

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1000937
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4555
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10009371	F003270	N/A	LSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNIMVQNRSQTNRAFAQSQSNRSYVPLDSFDSSTGSAFR*
JGI25136J39404_10009372	F008596	GGAG	MSGAWDLATATSLLTGVAKVQINGGNNLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTHINIVAPLLEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGCAGLAGTMTPGNLQLASYHNTHMPMKTSCKISTAFTNDITQSATTRFVMGVGYTKQG*
JGI25136J39404_10009373	F002100	AGGAG	LSQIPRDSFRPALIKPTFNVSDYGHDLIIPLNCLSGSTVTLVPSTSTFVQVLEDGRVPVDEVNQFITNSDEMAGVHAGNDSDYDTTFEWLPDMSFNAYKASFSLAVFMNVSAYTSGNFAISSVQLTMKVIGGGEGDQIIVDKIVNPGMSNMTSATSQIAILNVDTKTSAKIPDKPVSIQVKVNTSAGSGTYQCGIVPIFCYLAPAVPKTWTTSSVIVHAHADLAHAFPIFRDEDNMNMLDRSGIGL*
JGI25136J39404_10009374	F025299	AGGAG	MIIEEIPYFVEFVVLGIVLGFGYGFTKLFLNHAKDKSKVRRSERKAKEANSVEDEMDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRLLGKPILKKVLSVIDKFGV*
JGI25136J39404_10009375	F002150	N/A	MVGVAVPALLASKTVKKSGQVLQEQFGYNFIDLITKLALFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQKTYSSTPTAPGKFNPPGWDRSYDYGTEEHQQAEPHLFPQKDQQFRFWDLINAIAIFYISWEAYKYWNRGGNDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK*