Scaffold JGI25524J39351_100306

Overview

Basic Information

• Taxon OID: 3300002757
• Scaffold ID: JGI25524J39351_100306
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1997
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.32
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011352	Metagenome / Metatranscriptome	292	Y
F030842	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25524J39351_1003061	F030842	GGAG	MTTHSNHPITNAEDAAFDRTMKIVGSVIVLLVIAGVALTYFYS*
JGI25524J39351_1003064	F011352	AGGA	MPRYYFQLTDGKQVLNNHQGVDLAGNAAARDDAVVLARDLKHGNAMPGWNWTGWFVAIMDQHGHKVDEVPIMDV*