Scaffold draft_11050980

Overview

Basic Information

• Taxon OID: 3300002703
• Scaffold ID: draft_11050980
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil sands tailings Tailings Pond 5 - 2012TP5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2028
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Suncor Tailings Pond 6, Northern Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F058142	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_110509801	F002260	AGGAG	VSVPYQRISNATVQDIMFYDPAAERRAEALDVDWDRYFKVASQEWLYKMEFGWWQNYCDTVVGATYYNNLPNGSLISAFNPNLLIKNDQTLIRLDVFGAILVFYESLVTDVSNMNEVDVKNYEFAKERCDREWTKAQELSNWYDLYQDSPNGPTSKLEENYLADVNYFNGDRRYF*
draft_110509802	F058142	AGGAG	MPQIDYAVANEPYVTEDQIIAVIKRDIPKQWNIPVYSDFPSDVEAVRYGIYVSDVHLDERNPHQLGIQYCASIYHAYDTFSITYVSYQDDPYNRAVNAIIGNLVTALKDDGKQLFDGYFERNFDQVRTYGPTQSEKHTWTFRLLRMEFNT*
draft_110509804	F003807	AGGAG	MSENIWLRTKEEKLRSLINDEAKMMPMLDNMQATIRQMKAKQAFRLALLNQLLEDLDNQE