Scaffold C688J35102_120910459

Overview

Basic Information

• Taxon OID: 3300002568
• Scaffold ID: C688J35102_120910459
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA - 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2234
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032020	Metagenome / Metatranscriptome	181	Y
F062087	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
C688J35102_1209104593	F062087	N/A	VTTSEQYRARIRGLGLTPIGRTSAGKYQFHRARGGRVYPIREPDHLTEEERTEMIEYYEQQFSLD*
C688J35102_1209104594	F032020	AGAAGG	MLRNVEIDIVIVRGNAGLIHARSPQMRSLMLMGRSEDELWQDMDPVLRDLLDIQGDKVSTMTMDRPGRRVRVDVE*