Scaffold C688J35102_117957926

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold C688J35102_117957926

Scaffold C688J35102_117957926

Overview

Basic Information
Taxon OID	3300002568 Open in IMG/M
Scaffold ID	C688J35102_117957926 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location Name	Hopland, California
Coordinates	Lat. (^o)	38.99297339	Long. (^o)	-123.0674491	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011951	Metagenome / Metatranscriptome	285	Y
F020560	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
C688J35102_1179579261	F011951	AGG	MTGAQYEIRIGGTPRTYRDPKDYAMEAARLIKSKQPHSMVEVKDLKTGDVTAVALRPA*
C688J35102_1179579262	F020560	AGG	MERYLVELDGDQVELLSGMVRDAIKVADEKKVPALEALLSALGIMSWKAGDRRAD*

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