Scaffold JGI24135J36437_1014220

Overview

Basic Information

• Taxon OID: 3300002551
• Scaffold ID: JGI24135J36437_1014220
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1450
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow, Alaska, USA
• Coordinates
  • Lat. (^o): 71.290565
  • Long. (^o): -156.788622

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078013	Metagenome	117	Y
F079367	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24135J36437_10142202	F078013	GGA	MTLGXERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFKEAFADDEGEYDYDGSERNAKQRALIWYSDTLYSASELSFIMPKVVPHYKQFDGVKTIQLLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL*
JGI24135J36437_10142203	F079367	AGGAG	MKTPFKRGGASGDKFRHKDDIAWWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAENEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARRGRKLE*