Scaffold JGI24135J36437_1000165

Overview

Basic Information

• Taxon OID: 3300002551
• Scaffold ID: JGI24135J36437_1000165
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22821
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow, Alaska, USA
• Coordinates
  • Lat. (^o): 71.290565
  • Long. (^o): -156.788622

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007838	Metagenome / Metatranscriptome	344	Y
F014212	Metagenome	265	Y
F021450	Metagenome	219	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24135J36437_100016510	F014212	N/A	MKIKLLLAFLIFSASMSAQVIHVEGSKAIGLNGGYIKNGFNVSSRITLYEKNSMALRGSFDFEQVSFDISKASIVYVNPEFMYTFYTLGDNFFFNLKGGILSGVEFLSNSILDKKRSQFFVGENIGLCAEYYISNKIMLNLDSDQRFFQLSKVGKASFIIKFGINYNF*
JGI24135J36437_10001653	F021450	N/A	MKKTISLLALLLLFSIEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYKGFITSIVLYLAIYFCLVGIVAFIMAG*
JGI24135J36437_10001655	F007838	N/A	MLCLSVQVFGQVPVVVVKNPVWKAEDEVKDKIEASDRLREYAKLTEQVETEQKSLQVIKDATEKLRNINRKVANYHNLELAIEQVSDSYSRVLGLLKTIDEHNCFKPSEYHIISESLLGLISQTSYAISTLTVVLTDNFSEMTDAERLLNMNQALKELRENLGVINCAIIEVETLDNQRMQLRTLQYLNSIFK*