Scaffold JGI24132J36420

Basic Information
Taxon OID	3300002538 Open in IMG/M
Scaffold ID	JGI24132J36420_10000077 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002538 Open in IMG/M

Scaffold ID

JGI24132J36420_10000077 Open in IMG/M

Source Dataset Name

Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43562
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (15.28%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

43562

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (15.28%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.2905	Long. (^o)	-156.788708	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Barrow Environmental Observatory site, Barrow, Alaska, USA

Coordinates

Lat. (^o)

71.2905

Long. (^o)

-156.788708

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015885	Metagenome / Metatranscriptome	251	Y
F089778	Metagenome	108	Y
F098533	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24132J36420_1000007727	F098533	AGGA	MKLKSIDKLTLIEMINNFHLYIGLPDGLSQLPLPEYIKIKRKKLSIPKDLKEFTDSICYGQRLFLMRKEENDFGSILRVVNGYYYSYFKKWDEDNALLFGKYILTLKAKDLYPVAMHLTTLIGEMAEREQKLLHREPTKIEFAAGIEKLNVFSDLTSLDFLRDAMKCTVPEVLLTPYNECLVRFMIAKEQADFQERYYDLARKESQPKSKFA*
JGI24132J36420_100000774	F089778	N/A	MISLVTLTDLQSLKYICDSVKNSTSWPHFVSEAELFDIKVWLGDGLLNEIVGQASPSPQNISVANQLLLDGGTYTYQSKTYLFQGLKNCIIYYAFARFTNRTAFNYTAAGIVVKDSDLSTPISDKVMQRLETESRLMADAIQCEIITFLNRNYTNYPLWRNGNGVCGNSCGANGRIQLIGD*
JGI24132J36420_100000777	F015885	AGGAGG	MTIGCNQIIDCILKNCANLVPGIKDKAYFINYEDVDKDLSAFDPSNSLLCTQLVLKTVSPPAYAYCVEGYNFSNEHKTTMVKKTYQKVWDQGFTFRIFDNTPETKLWIQNAVDSRFMIIQENNYNKDIAPLAAGRTVFEILGWDFGLELNAVERDANSDELLGGWLLTAGCSDKLKESLPPLAYFVGGTLTATRAALASMVAPCCP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24132J36420_10000077

Overview

Ecosystem & Geography

Associated Families

Sequences