Scaffold C687J35503_10000229

Overview

Basic Information

• Taxon OID: 3300002530
• Scaffold ID: C687J35503_10000229
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14163
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050736	Metagenome / Metatranscriptome	145	Y
F056130	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
C687J35503_1000022910	F050736	AGGAG	MAAPTLSHLILTGALIAVVFAVQVFYFYVVDNISSEMLRRELRELTDYVADTIANLYLLLNATNTNPPLEKSLRLPLDVGGSFYSLDITYDAGNNAQTVKGVIQGKSWLNVTSWLPRGLKVDTMKTQTIGYSVKAAVAGCQRAAQNVYVWIAYKG*
C687J35503_1000022911	F056130	N/A	LRRLKLLPFLKHNRAASYTLSAMIMTAVTVALVLAAFIYAYQMLDQQRGISEWEVAKKSILAYNDALENVAWKPGATRSARFAAQYGYLQLIPNANSITISATVNGVARSLSNATYPGMTGIVKYWLSTDYVSFDPNYESYILGNSSSLISSSSDGYGRAVIRQQPGMVSMTLDYRIRAMRTSVILVNGTQTNYVDIWVIKLSMLVPSAWSYVNEFDLQAKTLSVTTASHRFTGVTNQTSVVSVQIGSAPASQVPVTLTVPGTVVYNVVVANVQVNV*