Scaffold JGI24818J35693_1008885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI24818J35693_1008885

Scaffold JGI24818J35693_1008885

Overview

Basic Information
Taxon OID	3300002526 Open in IMG/M
Scaffold ID	JGI24818J35693_1008885 Open in IMG/M
Source Dataset Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2015
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	8.0	Long. (^o)	-156.0	Alt. (m)		Depth (m)	550
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050430	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24818J35693_10088851	F050430	N/A	MDKKLKENIVVGIKIVGMLFFLIVLITTLVWPGGVDILANLFLTKE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.