Scaffold JGI25130J35507_1010079

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1010079
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2393
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017402	Metagenome / Metatranscriptome	241	Y
F035962	Metagenome / Metatranscriptome	171	Y
F087741	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10100794	F017402	AGG	MANDHAQDRYDPPGVGSDFDEHLYGDVVKGDIFRLKPLSTDKVYRKVDEYNCHDIVENQTKQFDAKLKVYVKS*
JGI25130J35507_10100795	F087741	GGAG	MKITXDVLAELQKIRSAIDDAYDKLNVVMYDRVTAVKTTYKPSNPSEKVTENFSYVSEKLKFIQDESELVGEE*
JGI25130J35507_10100796	F035962	AGGAG	MDKLGLYINNLMTTIVDKEDKFFLRKLAFEELLKLKSDVSDFLARYVDEFDGIPDELKEKDTKQLILEFGEQNENNX*