Scaffold JGI25130J35507_1009924

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1009924
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2414
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10099244	F081887	GAG	MIIEKNTICYTSEVGHKNFWYPTTNKVIVKENCEAERMSWLSGGIKVAIKILKSNLMPLDITANTTYNISPPTDDNYTVVWIKRCLKK*
JGI25130J35507_10099246	F082712	N/A	MDPSKENNKKWEKVRIFNNYHDANELRCVLLDNDDTGQLRVKVRRCGEDGLQFKVKTHFIERKKDER*
JGI25130J35507_10099247	F055656	AGGAGG	VEIFGIILFMNLCIFGYFTYSFMQYRKREKYRTQELNHKVQYLLDQMERDYQASSLEEEEPVANIFREHVIEEISRHRLVYDEKTGRYIKLRQIE*