Scaffold JGI25134J35505_10008700

Overview

Basic Information

• Taxon OID: 3300002518
• Scaffold ID: JGI25134J35505_10008700
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3487
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036024	Metagenome / Metatranscriptome	171	Y
F066274	Metagenome / Metatranscriptome	127	Y
F085510	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25134J35505_100087001	F085510	N/A	MKSVTIKIGDYDLLTLEKIFENEKEFAARDPRDELLVAIMRQIVDNPK
JGI25134J35505_1000870010	F066274	GAGG	MMIELASDEIGWVKYALTRAASTMEGRDPDMTRKEEKLLMRLVRKIEKQEEENLK*
JGI25134J35505_100087009	F036024	N/A	MTTEYRMGRIGDEDTFLKLDEAQKICQAKFAEYISEIKYEDGEEAIDDYAWHIVTPERFEKDWENDERLKKTDEIKAKYKNLVKNNRVVFFEIDWN*