Scaffold JGI25133J35611_10139195

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10139195
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 676
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007005	Metagenome	360	Y
F029125	Metagenome / Metatranscriptome	189	Y
F082794	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_101391951	F082794	AGTAG	MKLDSNEKMDLIPETFYITYYAKKHSKIITRKGLKFKPNTETQGKYLATADGIPRFWYWDCNATPNKNGNQWRQATGLITIKE*
JGI25133J35611_101391952	F007005	AGGAG	MDKTILVVEVTTYSGESKIYTIKKHAKTLEQASKFKVSLEDLNDREDTSYELFNRFGQFEVDTIEKVESGQDEIRF*
JGI25133J35611_101391953	F029125	N/A	KTKALDTVMESGSSETLIKALELCTKKIGISWVIDTSQIKQIANN*