Scaffold JGI25133J35611_10027597

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10027597
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2156
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007288	Metagenome / Metatranscriptome	354	Y
F044801	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100275974	F044801	N/A	MKGAILAFMLXTVVEGNVVDGAEXMLFRDIHRCQQFAYWIEHNCRDALCRGGIKQQKITAYCKPVMAGSNQKFWD*
JGI25133J35611_100275977	F007288	AGG	MEQGTKVDTVTVTAPEEEIVEESEVVELPPSVIQITERMDELREAIGQITNVLNSNQKELDTRVAAFNWYSQQLEMVTSEKQ*