Scaffold JGI25133J35611_10022701

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10022701
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2453
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035959	Metagenome / Metatranscriptome	171	Y
F051056	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100227012	F035959	GGAGG	MPKAESLVNVTFGATGEVYEMGKVYDVPAERLKKYPDYFKKKAAKPRNKQAATGENK*
JGI25133J35611_100227014	F051056	N/A	MPPPTTTFKVKGPMFDTPSQIGLGFAEAVNRGLLDLATFEGSNKVKLQLTPGHGRVTGNLRNHIGASIVRDYVAQVDAGEARYGRNLIYSSWVEGISKRNRARPGFPGYHMFKEAHDHMNNNPKLYEDYIGDALVEAFD*