Scaffold JGI25133J35611_10020720

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10020720
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100207203	F021554	N/A	LGLVLGFGYGFTKLFLNHAKDKNKITRKEKKVETDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIAGKPLLKKAMSLLDNFKV*
JGI25133J35611_100207204	F002100	GAGG	MSSFKPALIKPTYDVANFGEDLSLPLNCLSGSTATLTPSTATFVQVLEDGRVPIDSVPEFITDSDKMAMITAGDDTDFDTTWQFEPDMSAQAYTISFNFAVGMKVSAYTSGNFKISDVQVVCKQIGGGEGDFTYVNKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPITFQIKVNTDNATGTYQTGIIPLFCYFASAVPKTWTTSSILMHLHADLAHAFPIFRDQDNMNMLDTGIGYDHRRSTIFYRICNIGISFRIWLWFY*